IL_5FDV_313

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_313 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0992

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5FDV|1|2a|G|450
5FDV|1|2a|A|451
5FDV|1|2a|A|452
5FDV|1|2a|A|453
5FDV|1|2a|C|454
5FDV|1|2a|C|455
*
5FDV|1|2a|G|476
5FDV|1|2a|A|477
5FDV|1|2a|C|479
5FDV|1|2a|U|480
5FDV|1|2a|G|481
5FDV|1|2a|A|482
5FDV|1|2a|C|483

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16