3D structure

PDB id
5FDV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CGCUGAC*GGUGGAG
Length
14 nucleotides
Bulged bases
5FDV|1|1A|G|977
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5FDV_357 not in the Motif Atlas
Homologous match to IL_9DFE_024
Geometric discrepancy: 0.0424
The information below is about IL_9DFE_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_68243.1
Basepair signature
cWW-L-cWW-cWW-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

5FDV|1|1A|C|891
5FDV|1|1A|G|892
5FDV|1|1A|C|893
5FDV|1|1A|U|894
5FDV|1|1A|G|895
5FDV|1|1A|A|896
5FDV|1|1A|C|897
*
5FDV|1|1A|G|973
5FDV|1|1A|G|974
5FDV|1|1A|U|975
5FDV|1|1A|G|976
5FDV|1|1A|G|977
5FDV|1|1A|A|978
5FDV|1|1A|G|979

Current chains

Chain 1A
23S ribosomal RNA

Nearby chains

Chain 13
50S ribosomal protein L30

Coloring options:


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