IL_5FDV_360

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

5FDV|1|1A|U|2154, 5FDV|1|1A|A|2180

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FDV_360 not in the Motif Atlas

Homologous match to IL_9DFE_087

Geometric discrepancy: 0.1941

The information below is about IL_9DFE_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDV|1|1A|C|2151
5FDV|1|1A|U|2152
5FDV|1|1A|G|2153
5FDV|1|1A|U|2154
5FDV|1|1A|G|2155
5FDV|1|1A|A|2156
5FDV|1|1A|A|2157
5FDV|1|1A|C|2158
*
5FDV|1|1A|G|2177
5FDV|1|1A|G|2178
5FDV|1|1A|G|2179
5FDV|1|1A|A|2180
5FDV|1|1A|G|2181

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains