IL_9DFE_087

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

9DFE|1|1A|U|2132, 9DFE|1|1A|A|2158

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFE_087 not in the Motif Atlas

Homologous match to IL_8VTW_086

Geometric discrepancy: 0.2454

The information below is about IL_8VTW_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFE|1|1A|C|2129
9DFE|1|1A|U|2130
9DFE|1|1A|G|2131
9DFE|1|1A|U|2132
9DFE|1|1A|G|2133
9DFE|1|1A|A|2134
9DFE|1|1A|A|2135
9DFE|1|1A|C|2136
*
9DFE|1|1A|G|2155
9DFE|1|1A|G|2156
9DFE|1|1A|G|2157
9DFE|1|1A|A|2158
9DFE|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains