IL_5FJ1_007

3D structure

PDB id

5FJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the standard kink turn HmKt-7 as stem loop in P212121 space group

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGGAG*CGAAGAAC

Length

13 nucleotides

Bulged bases

5FJ1|1|G|A|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FJ1_007 not in the Motif Atlas

Geometric match to IL_5G4T_002

Geometric discrepancy: 0.0652

The information below is about IL_5G4T_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

5FJ1|1|G|G|3
5FJ1|1|G|G|4
5FJ1|1|G|G|5
5FJ1|1|G|A|6
5FJ1|1|G|G|7
*
5FJ1|1|G|C|16
5FJ1|1|G|G|17
5FJ1|1|G|A|18
5FJ1|1|G|A|19
5FJ1|1|G|G|20
5FJ1|1|G|A|21
5FJ1|1|G|A|22
5FJ1|1|G|C|23

Current chains

Chain G

HMKT-7

Nearby chains

Chain D

HMKT-7

Chain H

HMKT-7