IL_5FJ4_002

3D structure

PDB id

5FJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the standard kink turn HmKt-7 as stem loop bound with U1A and L7Ae proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGGAG*CGAAGAAC

Length

13 nucleotides

Bulged bases

5FJ4|1|H|A|29

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5FJ4|1|H|G|3
5FJ4|1|H|G|4
5FJ4|1|H|G|5
5FJ4|1|H|A|6
5FJ4|1|H|G|7
*
5FJ4|1|H|C|26
5FJ4|1|H|G|27
5FJ4|1|H|A|28
5FJ4|1|H|A|29
5FJ4|1|H|G|30
5FJ4|1|H|A|31
5FJ4|1|H|A|32
5FJ4|1|H|C|33

Current chains

Chain H

HMKT-7

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L7AE

Chain D

HMKT-7

Chain E

U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A

Chain G

50S RIBOSOMAL PROTEIN L7AE