IL_5FL8_006

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUGG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FL8_006 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3658

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5FL8|1|x|U|508
5FL8|1|x|U|509
5FL8|1|x|G|510
5FL8|1|x|G|511
*
5FL8|1|x|C|580
5FL8|1|x|U|581
5FL8|1|x|G|582
5FL8|1|x|G|583

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain E

60S ribosomal protein L6-A

Chain F

60S ribosomal protein L7-A

Chain f

60S ribosomal protein L33-A