IL_5FL8_029

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GACC*GGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GACC,GGUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FL8_029 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2708

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5FL8|1|x|G|1400
5FL8|1|x|A|1401
5FL8|1|x|C|1402
5FL8|1|x|C|1403
*
5FL8|1|x|G|1408
5FL8|1|x|G|1409
5FL8|1|x|U|1410
5FL8|1|x|C|1411

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6-A

Chain e

60S ribosomal protein L32

Chain y

5.8S ribosomal RNA; 5.8S rRNA