IL_5FL8_040

3D structure

PDB id

5FL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGUG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FL8_040 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2217

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5FL8|1|x|C|1984
5FL8|1|x|G|1985
5FL8|1|x|U|1986
5FL8|1|x|G|1987
*
5FL8|1|x|C|2034
5FL8|1|x|G|2035
5FL8|1|x|U|2036
5FL8|1|x|G|2037

Current chains

Chain x

25S ribosomal RNA

Nearby chains