IL_5FLX_012

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_012 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2573

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5FLX|1|1|U|152
5FLX|1|1|G|153
5FLX|1|1|U|154
5FLX|1|1|G|155
*
5FLX|1|1|U|163
5FLX|1|1|A|164
5FLX|1|1|G|165
5FLX|1|1|A|166

Current chains

Chain 1

18S RRNA

Nearby chains

Chain G

40S RIBOSOMAL PROTEIN S6

Chain Y

40S RIBOSOMAL PROTEIN S24