IL_5FLX_014

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_014 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.1778

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

5FLX|1|1|C|192
5FLX|1|1|C|193
5FLX|1|1|C|194
*
5FLX|1|1|G|205
5FLX|1|1|G|206
5FLX|1|1|G|207

Current chains

Chain 1

18S RRNA

Nearby chains

Chain I

40S RIBOSOMAL PROTEIN S8