IL_5FLX_018

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UCG,CGA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_018 not in the Motif Atlas

Geometric match to IL_2D6F_001

Geometric discrepancy: 0.2021

The information below is about IL_2D6F_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5FLX|1|1|U|314
5FLX|1|1|C|315
5FLX|1|1|G|316
*
5FLX|1|1|C|334
5FLX|1|1|G|335
5FLX|1|1|A|336

Current chains

Chain 1

18S RRNA

Nearby chains

Chain E

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain G

40S RIBOSOMAL PROTEIN S6