IL_5FLX_046

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

5FLX|1|1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_046 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.2131

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5FLX|1|1|G|924
5FLX|1|1|G|925
5FLX|1|1|A|926
5FLX|1|1|C|927
*
5FLX|1|1|G|1014
5FLX|1|1|U|1015
5FLX|1|1|U|1016
5FLX|1|1|U|1017
5FLX|1|1|U|1018

Current chains

Chain 1

18S RRNA

Nearby chains

Chain N

40S RIBOSOMAL PROTEIN S13

Chain b

40S RIBOSOMAL PROTEIN S27