IL_5FLX_056

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

5FLX|1|1|C|1109

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_056 not in the Motif Atlas

Homologous match to IL_4V88_439

Geometric discrepancy: 0.4826

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5FLX|1|1|G|1108
5FLX|1|1|C|1109
5FLX|1|1|G|1110
*
5FLX|1|1|C|1123
5FLX|1|1|C|1124

Current chains

Chain 1

18S RRNA

Nearby chains

Chain A

40S RIBOSOMAL PROTEIN SA

Chain B

40S RIBOSOMAL PROTEIN S3A

Chain b

40S RIBOSOMAL PROTEIN S27

Chain z

Internal ribosome entry site; IRES