IL_5FLX_062

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_062 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.292

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

5FLX|1|1|G|1235
5FLX|1|1|G|1236
*
5FLX|1|1|C|1521
5FLX|1|1|A|1522
5FLX|1|1|C|1523

Current chains

Chain 1

18S RRNA

Nearby chains

Chain P

40S RIBOSOMAL PROTEIN S15

Chain Q

40S RIBOSOMAL PROTEIN S16

Chain S

40S RIBOSOMAL PROTEIN S18

Chain f

UBIQUITIN-40S RIBOSOMAL PROTEIN S27A