IL_5FLX_068
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 5FLX|1|1|C|1331
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_068 not in the Motif Atlas
- Homologous match to IL_4V88_450
- Geometric discrepancy: 0.241
- The information below is about IL_4V88_450
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5FLX|1|1|U|1329
5FLX|1|1|G|1330
5FLX|1|1|C|1331
5FLX|1|1|A|1332
5FLX|1|1|U|1333
*
5FLX|1|1|A|1498
5FLX|1|1|U|1499
5FLX|1|1|G|1500
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain D
- 40S RIBOSOMAL PROTEIN S3
- Chain K
- 40S RIBOSOMAL PROTEIN S10
- Chain U
- 40S RIBOSOMAL PROTEIN S20
- Chain d
- 40S RIBOSOMAL PROTEIN S29
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