IL_5FLX_074
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 5FLX|1|1|G|1398
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_074 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.2565
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
5FLX|1|1|C|1395
5FLX|1|1|A|1396
5FLX|1|1|U|1397
5FLX|1|1|G|1398
5FLX|1|1|C|1399
*
5FLX|1|1|G|1447
5FLX|1|1|A|1448
5FLX|1|1|G|1449
5FLX|1|1|G|1450
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain Q
- 40S RIBOSOMAL PROTEIN S16
- Chain R
- 40S RIBOSOMAL PROTEIN S17
- Chain U
- 40S RIBOSOMAL PROTEIN S20
- Chain g
- GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1
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