IL_5FLX_075

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUA,UAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_075 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3576

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5FLX|1|1|C|1399
5FLX|1|1|U|1400
5FLX|1|1|A|1401
*
5FLX|1|1|U|1445
5FLX|1|1|A|1446
5FLX|1|1|G|1447

Current chains

Chain 1

18S RRNA

Nearby chains

Chain Q

40S RIBOSOMAL PROTEIN S16

Chain U

40S RIBOSOMAL PROTEIN S20

Chain g

GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1