IL_5FLX_080

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

5FLX|1|1|G|1552, 5FLX|1|1|A|1580, 5FLX|1|1|C|1581

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FLX|1|1|G|1550
5FLX|1|1|U|1551
5FLX|1|1|G|1552
5FLX|1|1|C|1553
5FLX|1|1|C|1554
5FLX|1|1|U|1555
5FLX|1|1|A|1556
5FLX|1|1|C|1557
5FLX|1|1|C|1558
*
5FLX|1|1|G|1577
5FLX|1|1|U|1578
5FLX|1|1|A|1579
5FLX|1|1|A|1580
5FLX|1|1|C|1581
5FLX|1|1|C|1582

Current chains

Chain 1

18S RRNA

Nearby chains

Chain D

40S RIBOSOMAL PROTEIN S3

Chain K

40S RIBOSOMAL PROTEIN S10

Chain U

40S RIBOSOMAL PROTEIN S20

Chain d

40S RIBOSOMAL PROTEIN S29