IL_5FLX_082
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGAUCG*CAUGAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_082 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.1306
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
5FLX|1|1|G|1604
5FLX|1|1|G|1605
5FLX|1|1|G|1606
5FLX|1|1|A|1607
5FLX|1|1|U|1608
5FLX|1|1|C|1609
5FLX|1|1|G|1610
*
5FLX|1|1|C|1629
5FLX|1|1|A|1630
5FLX|1|1|U|1631
5FLX|1|1|G|1632
5FLX|1|1|A|1633
5FLX|1|1|A|1634
5FLX|1|1|C|1635
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain F
- 40S RIBOSOMAL PROTEIN S5
- Chain S
- 40S RIBOSOMAL PROTEIN S18
- Chain T
- 40S RIBOSOMAL PROTEIN S19
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