IL_5FLX_106

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FLX|1|z|C|255
5FLX|1|z|G|256
5FLX|1|z|A|257
5FLX|1|z|G|258
5FLX|1|z|U|259
5FLX|1|z|A|260
5FLX|1|z|G|261
*
5FLX|1|z|C|272
5FLX|1|z|G|273
5FLX|1|z|A|274
5FLX|1|z|A|275
5FLX|1|z|A|276
5FLX|1|z|G|277

Current chains

Chain z

HCV-IRES

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA