IL_5FLX_107
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 5FLX|1|1|C|65, 5FLX|1|1|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_107 not in the Motif Atlas
- Homologous match to IL_8P9A_379
- Geometric discrepancy: 0.5311
- The information below is about IL_8P9A_379
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21667.2
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
5FLX|1|1|U|63
5FLX|1|1|A|64
5FLX|1|1|C|65
5FLX|1|1|G|66
5FLX|1|1|C|67
5FLX|1|1|A|68
*
5FLX|1|1|U|81
5FLX|1|1|G|82
5FLX|1|1|A|83
5FLX|1|1|A|84
5FLX|1|1|A|85
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain G
- 40S RIBOSOMAL PROTEIN S6
- Chain Y
- 40S RIBOSOMAL PROTEIN S24
Coloring options: