IL_5FLX_108

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGGGCAAG*CUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FLX|1|1|G|598
5FLX|1|1|A|599
5FLX|1|1|G|600
5FLX|1|1|G|601
5FLX|1|1|G|602
5FLX|1|1|C|603
5FLX|1|1|A|604
5FLX|1|1|A|605
5FLX|1|1|G|606
*
5FLX|1|1|C|636
5FLX|1|1|U|637
5FLX|1|1|C|638

Current chains

Chain 1

18S RRNA

Nearby chains

Chain C

40S RIBOSOMAL PROTEIN S2

Chain J

40S RIBOSOMAL PROTEIN S9

Chain X

40S RIBOSOMAL PROTEIN S23

Chain e

40S RIBOSOMAL PROTEIN S30