IL_5FLX_112

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FLX|1|1|G|1168
5FLX|1|1|G|1169
5FLX|1|1|A|1170
5FLX|1|1|G|1171
5FLX|1|1|U|1172
5FLX|1|1|A|1173
5FLX|1|1|U|1174
5FLX|1|1|G|1175
5FLX|1|1|G|1176
*
5FLX|1|1|C|1185
5FLX|1|1|U|1186
5FLX|1|1|G|1187
5FLX|1|1|A|1188
5FLX|1|1|A|1189
5FLX|1|1|A|1190
5FLX|1|1|C|1191

Current chains

Chain 1

18S RRNA

Nearby chains

Chain X

40S RIBOSOMAL PROTEIN S23