IL_5G2X_006

3D structure

PDB id

5G2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure a of Group II Intron Complexed with its Reverse Transcriptase

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUGA*UGAGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30069.1

Basepair signature

cWW-L-R-R-L-L-cWW

Number of instances in this motif group

4

Unit IDs

5G2X|1|A|A|124
5G2X|1|A|U|125
5G2X|1|A|G|126
5G2X|1|A|A|127
*
5G2X|1|A|U|154
5G2X|1|A|G|155
5G2X|1|A|A|156
5G2X|1|A|G|157
5G2X|1|A|U|158

Current chains

Chain A

GROUP II INTRON

Nearby chains

Chain B

5'-R(*CP*AP*CP*AP*UP*CP*CP*AP*UP*AP*AP*CP)-3'

Chain C

GROUP II INTRON-ENCODED PROTEIN LTRA