IL_5G2X_009

3D structure

PDB id

5G2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure a of Group II Intron Complexed with its Reverse Transcriptase

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAG*CUGUUAUCACCACAU

Length

20 nucleotides

Bulged bases

5G2X|1|A|U|293

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14550.1

Basepair signature

cWW-L-R-R-R-R-R-R-R-R-R-R-R-R-L-L-cWW

Number of instances in this motif group

1

Unit IDs

5G2X|1|A|G|264
5G2X|1|A|A|265
5G2X|1|A|A|266
5G2X|1|A|A|267
5G2X|1|A|G|268
*
5G2X|1|A|C|292
5G2X|1|A|U|293
5G2X|1|A|G|294
5G2X|1|A|U|295
5G2X|1|A|U|296
5G2X|1|A|A|297
5G2X|1|A|U|298
5G2X|1|A|C|299
5G2X|1|A|A|300
5G2X|1|A|C|301
5G2X|1|A|C|302
5G2X|1|A|A|303
5G2X|1|A|C|304
5G2X|1|A|A|305
5G2X|1|A|U|306

Current chains

Chain A

GROUP II INTRON

Nearby chains