IL_5G2X_016

3D structure

PDB id

5G2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure a of Group II Intron Complexed with its Reverse Transcriptase

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGGGUGGU*ACCUCCCUAC

Length

19 nucleotides

Bulged bases

5G2X|1|A|A|2486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83555.1

Basepair signature

cWW-L-R-R-R-L-L-cWW-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

5G2X|1|A|G|2436
5G2X|1|A|A|2437
5G2X|1|A|G|2438
5G2X|1|A|G|2439
5G2X|1|A|G|2440
5G2X|1|A|U|2441
5G2X|1|A|G|2442
5G2X|1|A|G|2443
5G2X|1|A|U|2444
*
5G2X|1|A|A|2478
5G2X|1|A|C|2479
5G2X|1|A|C|2480
5G2X|1|A|U|2481
5G2X|1|A|C|2482
5G2X|1|A|C|2483
5G2X|1|A|C|2484
5G2X|1|A|U|2485
5G2X|1|A|A|2486
5G2X|1|A|C|2487

Current chains

Chain A

GROUP II INTRON

Nearby chains