IL_5G2X_020

3D structure

PDB id

5G2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure a of Group II Intron Complexed with its Reverse Transcriptase

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAAUGC*GAGGAAAAAGGCUAUAGCACUAGAGCUUGAAAAUCU

Length

43 nucleotides

Bulged bases

5G2X|1|A|U|409, 5G2X|1|A|G|425, 5G2X|1|A|G|426, 5G2X|1|A|A|444, 5G2X|1|A|A|454, 5G2X|1|A|A|455

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5G2X|1|A|A|405
5G2X|1|A|G|406
5G2X|1|A|A|407
5G2X|1|A|A|408
5G2X|1|A|U|409
5G2X|1|A|G|410
5G2X|1|A|C|411
*
5G2X|1|A|G|423
5G2X|1|A|A|424
5G2X|1|A|G|425
5G2X|1|A|G|426
5G2X|1|A|A|427
5G2X|1|A|A|428
5G2X|1|A|A|429
5G2X|1|A|A|430
5G2X|1|A|A|431
5G2X|1|A|G|432
5G2X|1|A|G|433
5G2X|1|A|C|434
5G2X|1|A|U|435
5G2X|1|A|A|436
5G2X|1|A|U|437
5G2X|1|A|A|438
5G2X|1|A|G|439
5G2X|1|A|C|440
5G2X|1|A|A|441
5G2X|1|A|C|442
5G2X|1|A|U|443
5G2X|1|A|A|444
5G2X|1|A|G|445
5G2X|1|A|A|446
5G2X|1|A|G|447
5G2X|1|A|C|448
5G2X|1|A|U|449
5G2X|1|A|U|450
5G2X|1|A|G|451
5G2X|1|A|A|452
5G2X|1|A|A|453
5G2X|1|A|A|454
5G2X|1|A|A|455
5G2X|1|A|U|456
5G2X|1|A|C|457
5G2X|1|A|U|458

Current chains

Chain A

GROUP II INTRON

Nearby chains