IL_5G4U_004
3D structure
- PDB id
- 5G4U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Association of three two-k-turn units based on Kt-7 3bU,3nU, forming a triangular-shaped structure
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.65 Å
Loop
- Sequence
- GUGAG*CGAAGAUC
- Length
- 13 nucleotides
- Bulged bases
- 5G4U|1|F|A|6
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5G4U_004 not in the Motif Atlas
- Geometric match to IL_5G4U_006
- Geometric discrepancy: 0.1054
- The information below is about IL_5G4U_006
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_69229.2
- Basepair signature
- cWW-tHS-tSH-tSS-cWW-cWW-cWW-L
- Number of instances in this motif group
- 11
Unit IDs
5G4U|1|E|G|13
5G4U|1|E|U|14
5G4U|1|E|G|15
5G4U|1|E|A|16
5G4U|1|E|G|17
*
5G4U|1|F|C|3
5G4U|1|F|G|4
5G4U|1|F|A|5
5G4U|1|F|A|6
5G4U|1|F|G|7
5G4U|1|F|A|8
5G4U|1|F|U|9
5G4U|1|F|C|10
Current chains
- Chain E
- HMKT-7
- Chain F
- HMKT-7
Nearby chains
- Chain H
- 50S RIBOSOMAL PROTEIN L7AE
Coloring options: