Motif IL_69229.2 Version IL_69229.2 of this group appears in releases 3.89 to 3.95

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12	1-12	2-11	4-11	5-10	6-9	7-8
1	IL_7A0S_050	7A0S	0.7867	1	Kink-turn	X	LSU rRNA	C	1598	G	1599	U	1601	G	1602	A	1603	A	1604	A	1605	*	U	1426	G	1427	G	1428	A	1429	G	1430	cWW				ntHS	cWW
2	IL_5G4U_006	5G4U	0.1276	1	Kink-turn	J+I	HMKT-7	C	3	G	4	A	5	G	7	A	8	U	9	C	10	*	G	13	U	14	G	15	A	16	G	17	cWW	ntsS	tSH	tHS	ncWw	cWW
3	IL_5G4U_005	5G4U	0.1255	1	Kink-turn	I+J	HMKT-7	C	3	G	4	A	5	G	7	A	8	U	9	C	10	*	G	13	U	14	G	15	A	16	G	17	cWW	tsS	tSH	tHS	ncWw	cWW
4	IL_1RLG_004	1RLG	0.1037	1		D	25-MER	G	15	C	16	G	17	G	19	A	20	5BU	21	G	22	*	C	4	5BU	5	G	6	A	7	C	8	cWW	tsS	tSH	tHS	ncWw	cWW
5	IL_3NMU_004	3NMU	0.0877	1	Kink-turn	E	RNA (34-MER)	G	24	C	25	G	26	G	28	A	29	U	30	G	31	*	C	13	U	14	G	15	A	16	C	17	cWW		tSH	tHS	cWw	cWW
6	IL_3PLA_001	3PLA	0.0739	1		G+H	C/D guide RNA	U	8	U	9	G	10	G	12	A	13	U	14	G	15	*	C	29	U	30	G	31	A	32	A	33	cWW	ntsS	tSH	tHS	cWw	cWW
7	IL_3NVI_002	3NVI	0.0000	1	Kink-turn	F	RNA (24-mer)	G	15	C	16	G	17	G	19	A	20	U	21	G	22	*	C	4	U	5	G	6	A	7	C	8	cWW	tsS	tSH	tHS	cWw	cWW
8	IL_5GIP_003	5GIP	0.0867	1		G+H	C/D RNA	U	8	U	9	G	10	G	12	A	13	U	14	G	15	*	C	30	U	31	G	32	A	33	A	34	cWW	ntsS	tSH	tHS	cWw	cWW
9	IL_5GIP_001	5GIP	0.0816	1		H+G	C/D RNA	U	8	U	9	G	10	G	12	A	13	U	14	G	15	*	C	30	U	31	G	32	A	33	A	34	cWW	ntsS	tSH	tHS	cWw	cWW
10	IL_3Q3Z_002	3Q3Z	0.1690	1	Kink-turn	V	Cyclic di-GMP-II riboswitch	C	16	A	17	A	18	G	20	A	21	U	22	G	23	*	U	54	U	55	G	56	A	57	G	58	cWW	ntsS	tSH	tHS	cWw	cWW
11	IL_6DVK_002	6DVK	0.3696	2		H	RNA (95-MER)	C	68	G	69	U	70	G	73	A	74	C	75	G	76	*	C	18	C	19	G	20	A	21	G	22	cWW		tSH	tHS	ncBW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUGUGAUG*CUGAA	3
CGAAGAUC*GUGAG	2
GCGUGAUG*CUGAC	2
CGUUGAAA*UGGAG	1
GCGUGA(5BU)G*C(5BU)GAC	1
CAAUGAUG*UUGAG	1
CGUUUGACG*CCGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGUGAU*UGA	3
GAAGAU*UGA	2
CGUGAU*UGA	2
GUUGAA*GGA	1
CGUGA(5BU)*(5BU)GA	1
AAUGAU*UGA	1
GUUUGAC*CGA	1

Release history

Release	3.89	3.90	3.91	3.92	3.93	3.94	3.95
Date	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Kink-turn (6)
(5)
Basepair signature: cWW-tHS-tSH-tSS-cWW-cWW-cWW-L
Heat map statistics: Min 0.05 | Avg 0.26 | Max 0.85

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