IL_5G4V_002
3D structure
- PDB id
- 5G4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Association of four two-k-turn units based on Kt-7 3bG,3nC, forming a square-shaped structure
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.87 Å
Loop
- Sequence
- CGAG*CGAAGAG
- Length
- 11 nucleotides
- Bulged bases
- 5G4V|1|B|A|6
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5G4V_002 not in the Motif Atlas
- Geometric match to IL_2OZB_002
- Geometric discrepancy: 0.133
- The information below is about IL_2OZB_002
- Detailed Annotation
- Kink-turn from U4
- Broad Annotation
- Kink-turn
- Motif group
- IL_51265.3
- Basepair signature
- cWW-tSS-tHS-tSH-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
5G4V|1|A|C|14
5G4V|1|A|G|15
5G4V|1|A|A|16
5G4V|1|A|G|17
*
5G4V|1|B|C|3
5G4V|1|B|G|4
5G4V|1|B|A|5
5G4V|1|B|A|6
5G4V|1|B|G|7
5G4V|1|B|A|8
5G4V|1|B|G|9
Current chains
- Chain A
- HMKT-7
- Chain B
- HMKT-7
Nearby chains
- Chain D
- 50S RIBOSOMAL PROTEIN L7AE
Coloring options: