IL_5GAD_001

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGU*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_001 not in the Motif Atlas

Geometric match to IL_8P9A_245

Geometric discrepancy: 0.2905

The information below is about IL_8P9A_245

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

5GAD|1|1|U|34
5GAD|1|1|G|35
5GAD|1|1|U|36
*
5GAD|1|1|G|70
5GAD|1|1|C|71
5GAD|1|1|A|72

Current chains

Chain 1

ESRP 4.5S RNA

Nearby chains

Chain b

50S ribosomal protein L32