IL_5GAD_021

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5GAD|1|A|G|801, 5GAD|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_021 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0955

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|G|674
5GAD|1|A|A|675
5GAD|1|A|A|676
5GAD|1|A|A|677
5GAD|1|A|C|678
*
5GAD|1|A|G|799
5GAD|1|A|A|800
5GAD|1|A|G|801
5GAD|1|A|A|802
5GAD|1|A|U|803
5GAD|1|A|A|804
5GAD|1|A|G|805
5GAD|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15