IL_5GAD_126

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_126 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0679

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|G|1666
5GAD|1|A|G|1667
5GAD|1|A|A|1668
5GAD|1|A|A|1669
5GAD|1|A|C|1670
5GAD|1|A|U|1671
5GAD|1|A|A|1672
5GAD|1|A|G|1673
5GAD|1|A|G|1674
*
5GAD|1|A|C|1990
5GAD|1|A|U|1991
5GAD|1|A|G|1992
5GAD|1|A|U|1993
5GAD|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14