IL_5GAD_127

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAD_127 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0897

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5GAD|1|A|U|1851
5GAD|1|A|U|1852
5GAD|1|A|A|1853
5GAD|1|A|A|1854
5GAD|1|A|U|1855
5GAD|1|A|U|1856
5GAD|1|A|G|1857
5GAD|1|A|A|1858
5GAD|1|A|U|1859
5GAD|1|A|G|1860
*
5GAD|1|A|U|1882
5GAD|1|A|U|1883
5GAD|1|A|G|1884
5GAD|1|A|A|1885
5GAD|1|A|U|1886
5GAD|1|A|C|1887
5GAD|1|A|G|1888
5GAD|1|A|A|1889
5GAD|1|A|A|1890
5GAD|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains