IL_5GAE_009

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAE_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2008

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5GAE|1|A|C|274
5GAE|1|A|C|275
5GAE|1|A|U|276
5GAE|1|A|G|277
5GAE|1|A|A|278
5GAE|1|A|A|279
5GAE|1|A|U|280
5GAE|1|A|C|281
*
5GAE|1|A|G|359
5GAE|1|A|U|360
5GAE|1|A|G|361
5GAE|1|A|A|362
5GAE|1|A|G|363

Current chains

Chain A

23S rRNA

Nearby chains