IL_5GAE_011
3D structure
- PDB id
- 5GAE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with a translocating SecYEG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 5GAE|1|A|A|504, 5GAE|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAE_011 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.0824
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
5GAE|1|A|G|481
5GAE|1|A|A|482
5GAE|1|A|A|483
5GAE|1|A|C|484
*
5GAE|1|A|G|496
5GAE|1|A|A|497
5GAE|1|A|G|498
5GAE|1|A|U|499
5GAE|1|A|G|500
5GAE|1|A|A|501
5GAE|1|A|A|502
5GAE|1|A|A|503
5GAE|1|A|A|504
5GAE|1|A|A|505
5GAE|1|A|G|506
5GAE|1|A|A|507
5GAE|1|A|A|508
5GAE|1|A|C|509
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain T
- 50S ribosomal protein L22
- Chain V
- 50S ribosomal protein L24
- Chain g
- Protein translocase subunit SecY
Coloring options: