IL_5GAE_042

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

5GAE|1|A|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAE_042 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2169

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

5GAE|1|A|G|1087
5GAE|1|A|A|1088
5GAE|1|A|A|1089
5GAE|1|A|A|1090
5GAE|1|A|G|1091
*
5GAE|1|A|C|1100
5GAE|1|A|U|1101
5GAE|1|A|C|1102

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36