IL_5GAE_127
3D structure
- PDB id
- 5GAE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with a translocating SecYEG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- AUA*UGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAE_127 not in the Motif Atlas
- Homologous match to IL_5J7L_337
- Geometric discrepancy: 0.1623
- The information below is about IL_5J7L_337
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_51387.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 21
Unit IDs
5GAE|1|A|A|2459
5GAE|1|A|U|2460
5GAE|1|A|A|2461
*
5GAE|1|A|U|2489
5GAE|1|A|G|2490
5GAE|1|A|U|2491
5GAE|1|A|U|2492
5GAE|1|A|U|2493
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain N
- 50S ribosomal protein L16
Coloring options: