IL_5GAE_128

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AUGUGUAGGAUAGGU*ACCCUU

Length

21 nucleotides

Bulged bases

5GAE|1|A|U|2111, 5GAE|1|A|A|2114, 5GAE|1|A|G|2116, 5GAE|1|A|U|2118, 5GAE|1|A|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAE|1|A|A|2108
5GAE|1|A|U|2109
5GAE|1|A|G|2110
5GAE|1|A|U|2111
5GAE|1|A|G|2112
5GAE|1|A|U|2113
5GAE|1|A|A|2114
5GAE|1|A|G|2115
5GAE|1|A|G|2116
5GAE|1|A|A|2117
5GAE|1|A|U|2118
5GAE|1|A|A|2119
5GAE|1|A|G|2120
5GAE|1|A|G|2121
5GAE|1|A|U|2122
*
5GAE|1|A|A|2176
5GAE|1|A|C|2177
5GAE|1|A|C|2178
5GAE|1|A|C|2179
5GAE|1|A|U|2180
5GAE|1|A|U|2181

Current chains

Chain A

23S rRNA

Nearby chains