IL_5GAF_093

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAF_093 not in the Motif Atlas

Geometric match to IL_5J7L_332

Geometric discrepancy: 0.14

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

5GAF|1|A|A|2297
5GAF|1|A|A|2298
5GAF|1|A|U|2299
*
5GAF|1|A|A|2317
5GAF|1|A|G|2318
5GAF|1|A|G|2319
5GAF|1|A|U|2320
5GAF|1|A|U|2321

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5

Chain P

50S ribosomal protein L18