IL_5GAF_126

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAF_126 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0897

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5GAF|1|A|U|1851
5GAF|1|A|U|1852
5GAF|1|A|A|1853
5GAF|1|A|A|1854
5GAF|1|A|U|1855
5GAF|1|A|U|1856
5GAF|1|A|G|1857
5GAF|1|A|A|1858
5GAF|1|A|U|1859
5GAF|1|A|G|1860
*
5GAF|1|A|U|1882
5GAF|1|A|U|1883
5GAF|1|A|G|1884
5GAF|1|A|A|1885
5GAF|1|A|U|1886
5GAF|1|A|C|1887
5GAF|1|A|G|1888
5GAF|1|A|A|1889
5GAF|1|A|A|1890
5GAF|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains