IL_5GAG_019

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5GAG|1|A|G|801, 5GAG|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_019 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0823

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5GAG|1|A|G|674
5GAG|1|A|A|675
5GAG|1|A|A|676
5GAG|1|A|A|677
5GAG|1|A|C|678
*
5GAG|1|A|G|799
5GAG|1|A|A|800
5GAG|1|A|G|801
5GAG|1|A|A|802
5GAG|1|A|U|803
5GAG|1|A|A|804
5GAG|1|A|G|805
5GAG|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15