IL_5GAG_022

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_022 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0814

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5GAG|1|A|U|703
5GAG|1|A|G|704
5GAG|1|A|A|705
5GAG|1|A|A|706
5GAG|1|A|G|707
*
5GAG|1|A|U|724
5GAG|1|A|G|725
5GAG|1|A|G|726
5GAG|1|A|A|727
5GAG|1|A|G|728

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2