IL_5GAG_037

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_037 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.0963

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

5GAG|1|A|U|1004
5GAG|1|A|C|1005
5GAG|1|A|C|1006
5GAG|1|A|C|1007
5GAG|1|A|A|1008
5GAG|1|A|A|1009
5GAG|1|A|A|1010
5GAG|1|A|G|1011
*
5GAG|1|A|C|1150
5GAG|1|A|A|1151

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain R

50S ribosomal protein L20