IL_5GAG_049

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5GAG|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_049 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0841

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5GAG|1|A|C|1208
5GAG|1|A|U|1209
5GAG|1|A|G|1210
5GAG|1|A|C|1211
5GAG|1|A|G|1212
5GAG|1|A|A|1213
5GAG|1|A|A|1214
5GAG|1|A|G|1215
*
5GAG|1|A|U|1234
5GAG|1|A|G|1235
5GAG|1|A|G|1236
5GAG|1|A|A|1237
5GAG|1|A|G|1238

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20