IL_5GAG_087

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUU*AAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_087 not in the Motif Atlas

Geometric match to IL_1QBP_002

Geometric discrepancy: 0.3981

The information below is about IL_1QBP_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_13404.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

5GAG|1|A|C|2103
5GAG|1|A|C|2104
5GAG|1|A|U|2105
5GAG|1|A|U|2106
*
5GAG|1|A|A|2183
5GAG|1|A|A|2184
5GAG|1|A|U|2185
5GAG|1|A|G|2186

Current chains

Chain A

23S rRNA

Nearby chains