IL_5GAG_126

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAG_126 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0702

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5GAG|1|A|U|1851
5GAG|1|A|U|1852
5GAG|1|A|A|1853
5GAG|1|A|A|1854
5GAG|1|A|U|1855
5GAG|1|A|U|1856
5GAG|1|A|G|1857
5GAG|1|A|A|1858
5GAG|1|A|U|1859
5GAG|1|A|G|1860
*
5GAG|1|A|U|1882
5GAG|1|A|U|1883
5GAG|1|A|G|1884
5GAG|1|A|A|1885
5GAG|1|A|U|1886
5GAG|1|A|C|1887
5GAG|1|A|G|1888
5GAG|1|A|A|1889
5GAG|1|A|A|1890
5GAG|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains