IL_5GAH_003
3D structure
- PDB id
- 5GAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with SRP with detached NG domain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCAGGU*AAGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAH_003 not in the Motif Atlas
- Geometric match to IL_1MFQ_007
- Geometric discrepancy: 0.1821
- The information below is about IL_1MFQ_007
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5GAH|1|1|U|45
5GAH|1|1|C|46
5GAH|1|1|A|47
5GAH|1|1|G|48
5GAH|1|1|G|49
5GAH|1|1|U|50
*
5GAH|1|1|A|59
5GAH|1|1|A|60
5GAH|1|1|G|61
5GAH|1|1|C|62
5GAH|1|1|A|63
5GAH|1|1|G|64
Current chains
- Chain 1
- SRP 4.5S RNA
Nearby chains
- Chain i
- Signal recognition particle protein Ffh
Coloring options: