IL_5GAH_089

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

5GAH|1|A|G|2168, 5GAH|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAH_089 not in the Motif Atlas

Geometric match to IL_5J7L_329

Geometric discrepancy: 0.1526

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5GAH|1|A|G|2124
5GAH|1|A|G|2125
5GAH|1|A|A|2126
5GAH|1|A|G|2127
5GAH|1|A|G|2128
*
5GAH|1|A|C|2160
5GAH|1|A|C|2161
5GAH|1|A|G|2162
5GAH|1|A|A|2163
5GAH|1|A|C|2164
5GAH|1|A|C|2165
5GAH|1|A|U|2166
5GAH|1|A|U|2167
5GAH|1|A|G|2168
5GAH|1|A|A|2169
5GAH|1|A|A|2170
5GAH|1|A|A|2171
5GAH|1|A|U|2172
5GAH|1|A|A|2173
5GAH|1|A|C|2174

Current chains

Chain A

23S rRNA

Nearby chains